Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs76255497 chr10:104651955 T/C 2.91E-9 501 31.03 35.33 29.58 KM Plot
THCA rs7628619 chr3:53905099 C/T 3.57E-6 495 31.6 31.77 24.75 KM Plot
THCA rs7636572 chr3:53933804 A/C 2.74E-6 503 31.47 31.85 24.75 KM Plot
THCA rs7639110 chr3:122465769 T/C 7.02E-6 496 20.87 24.47 31.93 KM Plot
THCA rs7645033 chr3:122437321 T/C 7.07E-6 495 20.87 26.73 32.03 KM Plot
THCA rs76514049 chr12:123752637 G/A 1.89E-5 502 31.7 31.27 12.6 KM Plot
THCA rs76538455 chr7:44338204 G/A 1.46E-5 499 31.9 30.07 18.43 KM Plot
THCA rs76551337 chr8:144563622 A/G 7.13E-7 489 31.72 30.92 21.93 KM Plot
THCA rs76593280 chr16:79273114 G/A 4.35E-12 502 31.5 31.33 19.35 KM Plot
THCA rs76683399 chr3:97036737 A/G 5.11E-6 503 31.47 31.77 41.97 KM Plot
THCA rs76696865 chr7:43934944 TAAAA/T 1.51E-9 502 31.15 33.53 31.03 KM Plot
THCA rs76717407 chr15:40281018 A/G 0.000128 503 31.5 31.55 32.77 KM Plot
THCA rs76814253 chr19:33404631 G/A 6.02E-5 502 31.4 35.4 32.93 KM Plot
THCA rs76817219 chr3:38041346 G/A 0.000119 482 32.18 25.17 36.17 KM Plot
THCA rs76892505 chr10:104719290 G/A 1.08E-13 500 31.37 35.6 32.1 KM Plot